Building an open, self-consistent force field for biopolymers and small molecules with the open force field initiative infrastructure

نویسندگان

چکیده

The Open Force Field (OpenFF) Initiative develops open, reproducible force fields for atomistic molecular simulations as well automated infrastructure and systematic methodology their parametrization validation. Here we describe the extension of OpenFF to support biopolymers, enabling both small molecules biopolymers with a self-consistent field. workflow includes QCSubmit submission curation quantum chemical (QC) datasets via Molecular Sciences Software Institute QCArchive project; Toolkit preparation topologies parameter assignment using direct perception SMIRKS Native (SMIRNOFF) typing; Evaluator estimation condensed phase physical properties from simulations; ForceBalance robust optimization targeting QC property data.

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ژورنال

عنوان ژورنال: Biophysical Journal

سال: 2022

ISSN: ['0006-3495', '1542-0086']

DOI: https://doi.org/10.1016/j.bpj.2021.11.1367